Speedyseq
WebNOTE: Code and documentation copied (and very slightly modified) from an old version of speedyseq by Michael McLaren. speedyseq reimplements psmelt from phyloseq to use functions from the tidyr and dplyr packages. The name in microViz is changed to ps_melt for consistency with other functions. ps_melt(ps) Arguments ps (Required). WebJun 25, 2024 · This is the speedyseq reimplementation of phyloseq::tax_glom(). It should produce results that are identical to phyloseq up to taxon order. If x is a phyloseq object …
Speedyseq
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Webmikemc/speedyseq Faster implementations of phyloseq functions Package index Search the mikemc/speedyseq package Vignettes README.md Functions 141 Source code 26 Man pages 33 as_tibble-phyloseq: Coerce phyloseq objects to tibble data frames bad_flush_right: Replace all values with NA upon seeing a bad value WebLeverage our diverse collection of vital cell biology tools and services to advance your research, saving your time. With years of expertise in the cell biology industry, abm scientists aim to deliver the highest quality and most complete collection of cell culture products and services—bringing you the newest technologies at prices you can afford.
Web[abm] Vectors, Viruses & Cloning Systems > BRIC ... ... WebJul 21, 2024 · **Note: only speedyseq allows constructing phyloseq from tibble!** Ps_obj <- phyloseq(otu_table(abundance_mat, taxa_are_rows = TRUE), sample_data(Metadata), tax_table(Taxonomy), refseq(ASV_seqs))``` this is how abundance_mat looks: abundance_mat # A tibble: 1,024 × 1 ASV 1 Seq_1 2 Seq_2 3 Seq_3 4 Seq_4 5 Seq_5 …
WebCheck and release: check () updates the documentation, then builds and checks the package locally. check_win () checks a package using win-builder, and check_rhub () checks a package using r-hub. This allows you to easily check your package on all systems CRAN uses before submission. release () makes sure everything is ok with your package ... WebWhether you’re fueling your car, your body, or looking for great gas prices, we have what you need, when you need it fast.
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WebJun 25, 2024 · phyloseq online tutorials. This function wraps ggplot2 plotting, and returns a ggplot2 graphic object that can be saved or further modified with additional layers, options, etc. The main purpose of this function is to quickly and easily create informative summary graphics of the differences in taxa abundance between samples in an experiment. greyhound bus abqWebspeedyseq – Enhanced phyloseq Functions I recently discovered the R package speedyseq by Michael McLaren. It includes much faster implementations of some phyloseq … fidelity vs chase you investWebJun 30, 2024 · Breaking changes The default ordering of new taxa output by tax_glom() is different from previous versions and from phyloseq::tax_glom() in phyloseq objects that do not have phylogenetic trees. See "Minor improvements and fixes" for more information. New features New general-purpose vectorized taxa-merging function The new … greyhound burlington vt to bostonWebWhat is multiplicity of infection? In a nutshell, MOI is the ratio of infectious agents to infection targets. In many cases, it is the ratio of viral particles to target cells in a defined space, such as a cell culture well. M O I = I n f e c t i o u s A g e n t s I n f e c t i o n T a r g e t s = V i r a l P a r t i c l e s T a r g e t C e l l ... greyhound bus 48201WebJun 25, 2024 · mikemc/speedyseq: Faster implementations of phyloseq functions Faster implementations of phyloseq functions. Getting started README.md Browse package … greyhound bus 2121 houstonWebEssential SpeedSeq components can be installed with make, which produces a log file (install.log) that details the compilation status.. The installation is modular, and its units … fidelity vs edward jones roth iraWebspeedyseq 0.1.2 tax_glom () has a new implementation using base R functions instead of tibble and dplyr. The new tax_glom () code takes advantage of the fact that we are working with matrix data with a fixed row/col order and so do not need joining operations. fidelity vs lincoln investment